Mining microsatellites in eukaryotic genomes

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Web10 jul. 2007 · Precise need based microsatellites data retrieval is possible using different input parameters like microsatellite type (simple perfect or compound perfect), repeat … Web22 okt. 2007 · This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our …

(PDF) Mining of microsatellites in mitochondrial genomes of order ...

Web10 jul. 2007 · Microsatellites, also called as simple sequence repeats (SSRs) or simple tandem repeats (STRs) are ubiquitous component of eukaryotic genomes. A … WebIn silico mining: Retrieving microsatellites from sequence data-bases using microsatellite search tools (softwares/scripts). Microsatellite clusters: Genomic regions where … drivers ed simulators

[PDF] Is spatial occurrence of microsatellites in the genome a ...

Web8 dec. 2013 · Microsatellites (Simple Sequence Repeats) represent tandem repetition of 1–6 nucleotide long motifs occurring throughout the prokaryotic as well as eukaryotic genomes (Tóth et al. 2000).Their abundance and hypervariability, co-dominant inheritance, reproducibility, multi-allelic nature and wide genomic distribution make them markers of … WebComparison of microsatellite distribution in genomes of Centruroides exilicauda and Mesobuthus martensii Author links open overlay panel Chen Wang a 1 , Lukasz Jakub Kubiak a 1 , Lian-Ming Du a , Wu-Jiao Li a , Zuo-Yi Jian a , Ce Tang b , Zhen-Xin Fan a , Xiu-Yue Zhang a , Bi-Song Yue a WebSan-Xu Liu,Wei Hou,Xue-Yan Zhang,Chang-Jun Peng,Bi-Song Yue,2,Zhen-Xin Fan,Jing Li,2,＊ 1Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education,College of Life Sciences,Sichuan University,Chengdu epiphyllous fungi

Genome-wide survey and analysis of microsatellites in the Pacific ...

EuMicroSatdb: A database for microsatellites in the …

WebDuring recent decades, microsatellites have become the most popular source of genetic markers. More recently, the availability of enormous sequence data for a large … WebMicrosatellites in different eukaryotic genomes: survey and analysis. We examined the abundance of microsatellites with repeated unit lengths of 1-6 base pairs in several … epiphyllum beavertailWeb24 aug. 2024 · Microsatellite repeat DNA is best known for its length mutability, which is implicated in several neurological diseases and cancers, and often exploited as a genetic marker. Less well-known is the body of work exploring the widespread and surprisingly diverse functional roles of microsatellites. epiphyllum anguliger chrysocardium

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Mining microsatellites in eukaryotic genomes

Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes ...

Web1 dec. 2014 · Microsatellites or Simple Sequence Repeats (SSRs) represent tandem iterations of 1 to 6 nucleotide units that prevail non-randomly throughout the genome with variable degree in almost all prokaryotes as well as eukaryotes (Tóth et al., 2000, Kumpatla and Mukhopadhyay, 2005, Mrazek et al., 2007, Loire et al., 2013). Web5 nov. 2016 · Introduction. Microsatellites are iterations of 1 – 6 bp short tandem repeats, also called STR or SSR, which widely distributed in prokaryotic and eukaryotic genomes with an estimated average density of one locus per 2–30 Kb (Tautz, 1989, Stallings et al., 1991).Microsatellites differ from most other DNA sequences in their high degree of …

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Web1 sep. 2024 · Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes. ... Web31 dec. 2024 · Microsatellites or SSRs are the markers of selection due to their reproducibility, degree of polymorphism, distribution throughout the genome and co-dominant nature. Microsatellites are used...

Web1 jun. 2015 · In our study, genome-wide mining and characterization of microsatellites and marker development were very useful for the saturation of the allotetraploid genetic … Web31 dec. 2024 · Microsatellites (SSRs) are tandem repeat sequences in eukaryote genomes, including plant cytoplasmic genomes. The mitochondrial genome (mtDNA) …

Web22 mei 2024 · Sharma PC, Grover A, Kahl G (2007) Mining microsatellites in eukaryotic genomes. Trends Biotechnol 25(11):490–498. Article CAS PubMed Google Scholar Du LM, Li YZ, Zhang XY, Yue BS (2013) MSDB: a user-friendly program for reporting distribution and building databases of microsatellites from genome sequences. WebMicrosatellites or simple sequence repeats (SSRs) are tandem short stretches of DNA and consist of the re-peat units of 1-6 bp in length. They are ubiquitous in eukaryotic genomes and can be analyzed by PCR (polymerase chain reaction) technology. The SSR markers have been extensively used for genetic map-ping and population studies (1). SSRs ...

Mining microsatellites in eukaryotic genomes. During recent decades, …

Web3 apr. 2024 · Microsatellites or simple sequence repeats (SSRs) have become the most significant DNA marker technology used in genetic research. The availability of complete draft genomes for a number of Palmae species has made it possible to perform genome-wide analysis of SSRs in these species. epiphyllsWeb16 nov. 2013 · Microsatellites are a ubiquitous component of the eukaryote genome and constitute one of the most popular sources of molecular markers for genetic studies. However, no data are currently available regarding microsatellites across the entire genome in oysters, despite their importance to the aquaculture industry. drivers ed simulator onlineWebThis review addresses the current state of knowledge suggesting interrelationships between genomic locations, functions and evolutionary dynamics of microsatellites, and their subsequent implications in genome evolution. The non-random distribution of microsatellites in the genome has been implicated in a number of cellular and … drivers ed snoqualmieWebMicrosatellites in different eukaryotic genomes: survey and analysis We examined the abundance of microsatellites with repeated unit lengths of 1-6 base pairs in several eukaryotic taxonomic groups: primates, rodents, other mammals, nonmammalian vertebrates, arthropods, Caenorhabditis elegans, plants, yeast, and other fungi. drivers ed swansboro highschoolWeb20 jan. 2007 · The abundance of microsatellites in the two genomes of rice was computed as 363.62 loci per million base pairs for japonica and 354.64 loci per million base pairs for indica. We identified 134,822 microsatellite loci in 358.5 Mb japonica genome and 132,825 microsatellite loci in 374.5 Mb indica genome. drivers ed south lyon miWeb15 nov. 2011 · 3.1. Total and density of SSRs. We have analyzed the total number of loci for all the SSRs in each studied genome which belong to Potyvirus.Evidences showed that SSR density tends to be positively correlated with the genome size in some eukaryotic organisms (Katti et al., 2001, Tóth et al., 2000).However, it is amazing to find that the … drivers ed stevens point wiWeb24 aug. 2024 · A human genome-wide survey of GAA microsatellites, known for disrupting nucleosomes when present at extreme lengths corresponding those seen in FRDA … epiphyllum cactus diseases